This worked! This is the exact problem brought me here, and deleting the install from the app store and installing Evernote from the website fixed the problem!
JSargeant, did you notice that this isn't working anymore with the downloaded version of Evernote? I applied the advice in this thread a few months ago and got it working but since then I can't save any PDF I edit in Preview.app after opening it from Evernote without saving it as a new, separate copy of the original file.
How can I annotate PDF with external tool?
in Evernote for Mac Issues (Versions 7.14 and under)
Posted
JSargeant, did you notice that this isn't working anymore with the downloaded version of Evernote? I applied the advice in this thread a few months ago and got it working but since then I can't save any PDF I edit in Preview.app after opening it from Evernote without saving it as a new, separate copy of the original file.