I have some notes in the shortcuts list. When I use Command-1, Command-2, etc. to select the note, if the side list view is selected, the Notebook notes are not shown. There is no problem if I use Snippet view. (See the screenshots)
I updated my Evernote desktop app (Mac) to the 6.12.1 today and the app is creating multiple "conflict changes" notes while I'm writing a note. I'm just using the desktop app and sometimes when I'm writing and the app syncing, the conflicts notes are created. I always used the shortest sync interval.