This is still not resolved, despite the beta update. Besides annotations not working, a percentage of my notes has begun losing their attachments. This is devastating.
All of this shortly after increasing prices for the premium version with 40% and right around the time I was using Evernote to do my bookkeeping and taxes.
I have been forced to invest in Acrobat Reader Pro to be able to finish my tax filing. I think, at the very least, a refund and an apology are in order here.