Has this behavior changed? Another difference between web clipper and Windows is search of tags as you autocomplete. I prefer the web clipper. I tag recipes with ingredients and I often can't remember the exact syntax: red pepper vs pepper (red). typing "red" will bring up both tags in clipper but not in Windows.
I just updated my software to the latest version (184.108.40.20652) in order to alleviate bulleted list problems but it didn't help. I open certain notes and the list formatting loses its indentations and line breaks & spaces are created. I'll fix the list (turn list off and back on will remove the spaces, then re-indent). Some time later, the formatting breaks again.